PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001147.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 483aa    MW: 55582.1 Da    PI: 6.2998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001147.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.72.4e-1082161575
                     FAR1   5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgk 75 
                              +YA+  GF+vr+s+ kk+ + geit++ +vCs++g++    +k           +k+rr+r+++r+gC+ak++  ++  ++
  Itr_sc001147.1_g00004.1  82 SYARVGGFNVRQSTVKKN-MIGEITMKYLVCSRQGFKGCCCNKlkireegddiITKQRRRRTSNRVGCNAKVNQALDFGHQ 161
                              7************99998.8888***************9999999*******999999*************9877776555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.1E-782157IPR004330FAR1 DNA binding domain
PfamPF105518.8E-22263347IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDVVWASPSI HPFYDFIHLF EFTETEMYRS ADFKITWMQS GYLHMDGDED WVLDGDFLSA  60
PASILLRFTK SDICWVWVTR RSYARVGGFN VRQSTVKKNM IGEITMKYLV CSRQGFKGCC  120
CNKLKIREEG DDIITKQRRR RTSNRVGCNA KVNQALDFGH QTFIANCALA NIGPTQTFRL  180
YKQVVGGFEH IGATVVEFFN FKRDLQAYIE GGDAQMIIEK LCQKKEFCTY FYYAFQVDED  240
NHLSRLFWYD PIAWCNFSNF GDIVSFDATY GTNKYILAFV PFTSVDNHKQ CVTFAAGLLT  300
KEDVDSYTWL LENFKDAMGQ SPLCFVTDQD PAIKIAIPCV FDKCRHHFWE NSAFGKFTYP  360
HASLLEFYMN FEGVIDAQRH NQSKRDAECE GYLPELKTPL ELEHHVATTY TITIFFEVQK  420
EIIGGYFNCR VIAIRGEGEL TMYDIKGDNG RIFRVQHNSV VSEHSKAVHC ATVDAASYYG  480
AND
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-34FAR1-related sequence 5